JupyterHub: Added MATLAB Kernel & Web App
David Crompton
parent
fca8aacba7
commit
4d186c69bc
|
|
@ -134,11 +134,17 @@ in {
|
|||
environment.sessionVariables = {
|
||||
inherit MATLAB_INSTALL_DIR;
|
||||
};
|
||||
environment.systemPackages = (with nix-matlab.packages.x86_64-linux; [
|
||||
nixpkgs.overlays = [
|
||||
(final: prev: {
|
||||
inherit matlab-update-script;
|
||||
matlab = (matlab-run "matlab");
|
||||
matlab-mex = (matlab-run "mex");
|
||||
})
|
||||
];
|
||||
environment.systemPackages =(with pkgs; [
|
||||
matlab-update-script
|
||||
(matlab-run "matlab")
|
||||
(matlab-run "mex")
|
||||
]) ++ (with pkgs; [
|
||||
matlab
|
||||
matlab-mex
|
||||
octaveFull
|
||||
]);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,20 +1,161 @@
|
|||
{ config, pkgs, lib, ... }: {
|
||||
{ config, pkgs, lib, ... }: let
|
||||
aiomcache = pkgs.python3.pkgs.buildPythonPackage rec {
|
||||
pname = "aio-memcache";
|
||||
version = "0.8.1";
|
||||
|
||||
src = pkgs.fetchFromGitHub {
|
||||
owner = "aio-libs";
|
||||
repo = "aiomcache";
|
||||
rev = "v${version}";
|
||||
hash = "sha256-oRMN1seEjFSsq4wjkIXHM7Osq8y/5WFExGCEr6eM9vc=";
|
||||
};
|
||||
|
||||
propagatedBuildInputs = with pkgs.python3.pkgs; [
|
||||
python-memcached
|
||||
];
|
||||
|
||||
# Networking required
|
||||
doCheck = false;
|
||||
};
|
||||
aiohttp-session = pkgs.python3.pkgs.buildPythonPackage rec {
|
||||
pname = "aiohttp-session";
|
||||
version = "2.12.0";
|
||||
|
||||
src = pkgs.fetchFromGitHub {
|
||||
owner = "aio-libs";
|
||||
repo = "aiohttp-session";
|
||||
rev = "v${version}";
|
||||
hash = "sha256-7MNah4OIQnoxLoZkLOdeu5uCwSyPMhc6Wsht8dFconc=";
|
||||
};
|
||||
|
||||
propagatedBuildInputs = with pkgs.python3.pkgs; [
|
||||
aiohttp
|
||||
aiomcache
|
||||
cryptography
|
||||
multidict
|
||||
pynacl
|
||||
redis
|
||||
yarl
|
||||
];
|
||||
|
||||
# Checks require networking
|
||||
doCheck = false;
|
||||
};
|
||||
matlab-proxy = pkgs.python3.pkgs.buildPythonPackage rec {
|
||||
pname = "matlab_proxy";
|
||||
version = "0.12.1";
|
||||
format = "wheel";
|
||||
src = pkgs.python3.pkgs.fetchPypi {
|
||||
inherit pname version format;
|
||||
dist = "py3";
|
||||
python = "py3";
|
||||
hash = "sha256-TDZUJEXJYF5Vh2BG5o13H3wdh/WdVdoESXqL89ckc6I=";
|
||||
};
|
||||
|
||||
propagatedBuildInputs = with pkgs.python3.pkgs; [
|
||||
aiohttp
|
||||
aiohttp-session
|
||||
psutil
|
||||
|
||||
# For Xvfb, for plots and graphics
|
||||
pkgs.xorg.xorgserver
|
||||
];
|
||||
};
|
||||
simpervisor = pkgs.python3.pkgs.buildPythonPackage rec {
|
||||
pname = "simpervisor";
|
||||
version = "1.0.0";
|
||||
format = "pyproject";
|
||||
|
||||
src = pkgs.fetchFromGitHub {
|
||||
owner = "jupyterhub";
|
||||
repo = "simpervisor";
|
||||
rev = "v${version}";
|
||||
hash = "sha256-73vkiQtOT0M9Vww1nYZ76JR2koWt/NPIav46k1fHOzc=";
|
||||
};
|
||||
|
||||
nativeBuildInputs = with pkgs.python3.pkgs; [
|
||||
hatchling
|
||||
];
|
||||
};
|
||||
jupyter-server-proxy = pkgs.python3.pkgs.buildPythonPackage rec {
|
||||
pname = "jupyter_server_proxy";
|
||||
version = "4.1.0";
|
||||
format = "pyproject";
|
||||
|
||||
src = pkgs.python3.pkgs.fetchPypi {
|
||||
inherit pname version;
|
||||
hash = "sha256-LPrDtCMv5xROjmApa0+GFwi08TspJgos8ol2v45hf3A=";
|
||||
};
|
||||
|
||||
nativeBuildInputs = with pkgs.python3.pkgs; [
|
||||
hatchling
|
||||
hatch-jupyter-builder
|
||||
hatch-nodejs-version
|
||||
jupyterlab
|
||||
];
|
||||
|
||||
propagatedBuildInputs = with pkgs.python3.pkgs; [
|
||||
notebook
|
||||
simpervisor
|
||||
aiohttp
|
||||
];
|
||||
|
||||
# tests require network
|
||||
doCheck = false;
|
||||
};
|
||||
|
||||
jupyter-matlab-proxy = pkgs.python3.pkgs.buildPythonPackage rec {
|
||||
pname = "jupyter_matlab_proxy";
|
||||
version = "0.11.0";
|
||||
format = "wheel";
|
||||
|
||||
src = pkgs.python3.pkgs.fetchPypi {
|
||||
inherit pname version format;
|
||||
python = "py3";
|
||||
dist = "py3";
|
||||
hash = "sha256-KzQgs1zXGPjONCnLvCNQkQBkkkn9J29YFi8BHbh+D1I=";
|
||||
};
|
||||
|
||||
propagatedBuildInputs = with pkgs.python3.pkgs; [
|
||||
jupyter-server-proxy
|
||||
simpervisor
|
||||
matlab-proxy
|
||||
psutil
|
||||
requests
|
||||
ipykernel
|
||||
];
|
||||
};
|
||||
in {
|
||||
services.jupyterhub = {
|
||||
enable = true;
|
||||
port = 6501;
|
||||
# https://github.com/jupyterhub/systemdspawner
|
||||
# Configuration options defined ^
|
||||
# mem_limit must be higher to allow for MATLAB
|
||||
extraConfig = ''
|
||||
c.SystemdSpawner.mem_limit = '2G'
|
||||
c.SystemdSpawner.cpu_limit = 1.0
|
||||
c.SystemdSpawner.mem_limit = '8G'
|
||||
c.SystemdSpawner.cpu_limit = 2.0
|
||||
c.SystemdSpawner.isolate_devices = False
|
||||
c.SystemdSpawner.extra_paths = [
|
||||
'${pkgs.buildEnv {
|
||||
name = "jupyterhub-system-spawner-env";
|
||||
paths = with pkgs; [
|
||||
gcc
|
||||
# For MATLAB Kernel
|
||||
matlab
|
||||
# For matlab-proxy-app
|
||||
(pkgs.python3.withPackages (p: with p; [
|
||||
# For pkg_resources
|
||||
setuptools
|
||||
matlab-proxy
|
||||
jupyter-matlab-proxy
|
||||
]))
|
||||
];
|
||||
}}/bin']
|
||||
c.SystemdSpawner.environment["MATLAB_INSTALL_DIR"] = "${config.environment.sessionVariables.MATLAB_INSTALL_DIR}"
|
||||
c.SystemdSpawner.environment["LM_LICENSE_FILE"] = "${config.environment.sessionVariables.LM_LICENSE_FILE}"
|
||||
c.SystemdSpawner.environment["MLM_LICENSE_FILE"] = "${config.environment.sessionVariables.MLM_LICENSE_FILE}"
|
||||
# c.SystemdSpawner.environment["MWI_JUPYTER_LOG_LEVEL"] = "DEBUG"
|
||||
'';
|
||||
# Extra Paths used to add gcc et al for packages like Brian2
|
||||
# https://github.com/jupyterhub/systemdspawner#extra_paths
|
||||
|
|
@ -28,6 +169,8 @@
|
|||
jupyter-console
|
||||
jupyterlab-lsp
|
||||
python-lsp-server
|
||||
# MATLAB Proxy Needs to be here in order to modify and add the "launch matlab" etc.
|
||||
jupyter-matlab-proxy # <-- This in effect adds the kernel
|
||||
]);
|
||||
|
||||
kernels = {
|
||||
|
|
|
|||
Loading…
Reference in New Issue